Updating GTNet¶
As the GTDB taxonomy is updated, GTNet will also need to be updated. This amounts to retraining the network with the new taxonomy and updating the gtnet software to use the new model and taxonomy.
Training a new model¶
Software for training GTNet is available in the deep-taxon repository.
Uploading to OSF¶
Once a model is trained, calibrated, and packaged, the deployment package needs to be made publicly available. GTNet is currently carried hosted on OSF.
Updating the gtnet software¶
After training a new model and packaging the model, the DeployPkg
class will need to be
updated with the new URL and checksum of the new deployment package. This can be done starting around
here
in the code.